Nextflow workflow report

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: null.

The full error message was:

Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:FILTER_BAM_BAMTOOLS:BAM_FILTER (Med1_VCAP_Daro_REP2)'

Caused by:
  Process `NFCORE_CHIPSEQ:CHIPSEQ:FILTER_BAM_BAMTOOLS:BAM_FILTER (Med1_VCAP_Daro_REP2)` terminated for an unknown reason -- Likely it has been terminated by the external system

Command executed:

  samtools view \
      -F 0x004 \
      -F 0x0400 \
      -q 1 \
      -L genome.include_regions.bed \
      -b Med1_VCAP_Daro_REP2.mLb.mkD.sorted.bam \
      | bamtools filter \
          -out Med1_VCAP_Daro_REP2.mLb.noPublish.bam \
          -script bamtools_filter_se.json
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CHIPSEQ:CHIPSEQ:FILTER_BAM_BAMTOOLS:BAM_FILTER":
      samtools: $(echo $(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*$//')
      bamtools: $(echo $(bamtools --version 2>&1) | sed 's/^.*bamtools //; s/Part .*$//')
  END_VERSIONS

Command exit status:
  -

Command output:
  (empty)

Work dir:
  /input/data/work/9a/7ccc362b7ea75604b0b8924b76e1ee

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`